PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G060400.2
Common NameB456_006G060400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 267aa    MW: 30004.6 Da    PI: 7.1986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G060400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-08155202455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR +iN+++  L++++P +    ++ +  a +L + ++Y++sLq
  Gorai.006G060400.2 155 SHSLAERVRRGKINERLRCLQDIVPGC----HRTMGMAVMLDEIINYVQSLQ 202
                         8*************************9....889999*************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16149219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-8149206No hitNo description
PROSITE profilePS5088814.996151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15151213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-8157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MADFTSDFQS FKQSFSFLDM ESLNHFTELN PRLLDNSVMN YQSFLPSSID NFFSNQAQAI  60
PGHEGGNLQS TASVFQPLLS AKTELIHESM KRKALDVSKS SSFGNSLSSP QVSEAEVKRR  120
NDSGRGKRAK RNEKEEEKPK DVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDIVPG  180
CHRTMGMAVM LDEIINYVQS LQNQIEFLSM KLTAASTYYD FNSEPDALER MQAQEAKELE  240
RLMREGYVGG LACFHSSSSS TWSSLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117130KRRNDSGRGKRAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484285.10.0PREDICTED: transcription factor BEE 1-like
SwissprotQ8GWK78e-64BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0D2RXV30.0A0A0D2RXV3_G
STRINGPOPTR_0012s05210.11e-101(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.11e-57BR enhanced expression 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]